PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0095s0854.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 262aa    MW: 29610.5 Da    PI: 9.8481
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0095s0854.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.12.1e-1081162198
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f+k +++s+v+   +l lp +f+++h++k+  + ++tled++g++   k+  ++++             ++++L +gD +vF+l++ ++f
  Kaladp0095s0854.1.p  81 FVKPMLQSHVTGGFWLGLPQRFCKAHMSKE--DEMMTLEDKDGNESPSKYLADRTG------------LNDHELVDGDALVFQLIRPTKF 156
                          89************************9884..559***************444444............57***************97777 PP

                          ..EEEEE- CS
                   B3  91 elvvkvfr 98 
                            +v ++r
  Kaladp0095s0854.1.p 157 --KVYIIR 162
                          ..888877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.73E-1774164IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-1276164IPR015300DNA-binding pseudobarrel domain
CDDcd100171.06E-1879162No hitNo description
SMARTSM010192.3E-1381164IPR003340B3 DNA binding domain
PfamPF023624.1E-981162IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MVASATSNYE ERRRQRLEKN KKRMEELNLL NLSKSLSAAT PKLSPAKKQW KPKSARKEVD  60
LSAVRRAEQL ELELGSEFPC FVKPMLQSHV TGGFWLGLPQ RFCKAHMSKE DEMMTLEDKD  120
GNESPSKYLA DRTGLNDHEL VDGDALVFQL IRPTKFKVYI IRVNEHENGD DSNEDVADED  180
GNDVVLLKSV PKAKPRKVAK PRKVAEPSPG TRRSRRKKST DEDEDDGDDF FLVKVPETKS  240
GELTDPSAGT RRSKRIKSSR K*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007042396.11e-60AP2/B3-like transcriptional factor family protein, putative
SwissprotQ1G3M39e-49Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBLA0A061E0U41e-60A0A061E0U4_THECC; AP2/B3-like transcriptional factor family protein, putative
STRINGVIT_03s0063g00620.t017e-60(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-44B3 family protein